Stem-loop cpi-mir-551-2

Accession

MI0029582

Description

Chrysemys picta cpi-mir-551-2 precursor miRNA

Sequence

2192 reads, 24.0 reads per million, 12 experiments

ccuccauggcuccAGAAAUCAAGGGUGGGUGAGACCUcguaagaaaacgugaagGCGACCCAUACUUGGUUUCAGgggcugugagga
((((.((((((((.(((((((((.((((((..(.((((((......)))...)))).)))))).))))))))).)))))))))))).

Structure

-    c        A         G      GA A   ---   aa 
 ccuc auggcucc GAAAUCAAG GUGGGU  G CCU   cgu  g
 |||| |||||||| ||||||||| ||||||  | |||   |||   
 ggag ugucgggG CUUUGGUUC UACCCA  C Gga   gca  a
a    -        A         A      -G -   agu   aa 

Annotation confidence High

Genome context

KK088236.1: 2633682-2633768 [-]

Mature cpi-miR-551-2-5p

• Accession: MIMAT0059173
• Description: Chrysemys picta cpi-miR-551-2-5p mature miRNA
• Sequence: 14 - AGAAAUCAAGGGUGGGUGAGACCU - 37
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-551-2-3p

• Accession: MIMAT0037905
• Description: Chrysemys picta cpi-miR-551-2-3p mature miRNA
• Sequence: 55 - GCGACCCAUACUUGGUUUCAG - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196