Stem-loop cpi-mir-1388

Accession

MI0029589

Description

Chrysemys picta cpi-mir-1388 precursor miRNA

Sequence

gugagggguguuucgAGGACUGUCUAACCUGAGAAUggugaaacaugaaggucaAUCUCAGGUUCGUCAGCCCAUgagacgccuucuccaga
(.(((((((((((((.((.(((.(.(((((((((.(((.............))).))))))))).).))).)).))))))))).)))))...

Structure

--- u    -         A  A   U U         A   ugaaa 
   g gagg gguguuucg GG CUG C AACCUGAGA Ugg     c
   | |||| ||||||||| || ||| | ||||||||| |||     a
   c cucu ccgcagagU CC GAC G UUGGACUCU acu     u
aga -    u         A  C   U C         A   ggaag 

Annotation confidence Not enough data

Genome context

KK082954.1: 1007712-1007803 [-]

Mature cpi-miR-1388-5p

• Accession: MIMAT0037913
• Description: Chrysemys picta cpi-miR-1388-5p mature miRNA
• Sequence: 16 - AGGACUGUCUAACCUGAGAAU - 36
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-1388-3p

• Accession: MIMAT0037914
• Description: Chrysemys picta cpi-miR-1388-3p mature miRNA
• Sequence: 55 - AUCUCAGGUUCGUCAGCCCAU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196