Stem-loop cpi-mir-1397

Accession

MI0029590

Description

Chrysemys picta cpi-mir-1397 precursor miRNA

Sequence

14352 reads, 161.0 reads per million, 12 experiments

ugcgaugugugcauUGCAUUGCGACGGGUUACAUCacuggucguaacaugAUGUAACCCAACGCAGCAUGauguaagcgucgug
.(((((((.((((((...(((((..(((((((((((.((.......)))))))))))))..)))))...)))))).))))))).

Structure

u       g      GCA     AC           c  gu 
 gcgaugu ugcauU   UUGCG  GGGUUACAUCa ug  c
 ||||||| ||||||   |||||  ||||||||||| ||  g
 ugcugcg auguaG   GACGC  CCCAAUGUAgu ac  u
g       a      UAC     AA           -  aa 

Annotation confidence High

Genome context

KK082916.1: 10384958-10385041 [+]

Mature cpi-miR-1397-5p

• Accession: MIMAT0037915
• Description: Chrysemys picta cpi-miR-1397-5p mature miRNA
• Sequence: 15 - UGCAUUGCGACGGGUUACAUC - 35
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-1397-3p

• Accession: MIMAT0059175
• Description: Chrysemys picta cpi-miR-1397-3p mature miRNA
• Sequence: 51 - AUGUAACCCAACGCAGCAUG - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196