Stem-loop cpi-mir-1662

Accession

MI0029593

Description

Chrysemys picta cpi-mir-1662 precursor miRNA

Sequence

6341 reads, 70.0 reads per million, 12 experiments

ugugcucuauggguUUGACAUCAUCAUACUUGAGAUGuaugacacaaaguCCCAAGCAGGCUGAUGUCAGGCccaagauggcug
.((..(((.((((((((((((((.(...((((.(((............))).))))...).)))))))))))))))))..))..

Structure

-u  gc   a              U AUA    A   Guaug 
  gu  ucu uggguUUGACAUCA C   CUUG GAU     a
  ||  ||| |||||||||||||| |   |||| |||      
  cg  aga accCGGACUGUAGU G   GAAC Cug     c
gu  gu   -              C GAC    C   aaaca 

Annotation confidence High

Genome context

KK082971.1: 3853380-3853463 [-]

Mature cpi-miR-1662-5p

• Accession: MIMAT0037918
• Description: Chrysemys picta cpi-miR-1662-5p mature miRNA
• Sequence: 15 - UUGACAUCAUCAUACUUGAGAUG - 37
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-1662-3p

• Accession: MIMAT0037919
• Description: Chrysemys picta cpi-miR-1662-3p mature miRNA
• Sequence: 51 - CCCAAGCAGGCUGAUGUCAGGC - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196