Stem-loop cpi-mir-1677c

Accession

MI0029596

Description

Chrysemys picta cpi-mir-1677c precursor miRNA

Sequence

1820 reads, 20.0 reads per million, 12 experiments

ccucuucaaggccuaaUCCAGAGCCCAUUGAAGUCAGUgggaaucuuucuauUGACUUCAGUGGGCUUUGGAUCaggccuugggagcu
.((((.((((((((.(((((((((((((((((((((((((((....))))))))))))))))))))))))))).))))))))))))..

Structure

-c    u        a                           a 
  cucu caaggccu aUCCAGAGCCCAUUGAAGUCAGUggga u
  |||| |||||||| |||||||||||||||||||||||||||  
  gagg guuccgga UAGGUUUCGGGUGACUUCAGUuaucuu c
uc    -        C                           u 

Annotation confidence High

Genome context

chr6: 7236705-7236792 [-]

Mature cpi-miR-1677c-5p

• Accession: MIMAT0037924
• Description: Chrysemys picta cpi-miR-1677c-5p mature miRNA
• Sequence: 17 - UCCAGAGCCCAUUGAAGUCAGU - 38
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-1677c-3p

• Accession: MIMAT0037925
• Description: Chrysemys picta cpi-miR-1677c-3p mature miRNA
• Sequence: 53 - UGACUUCAGUGGGCUUUGGAUC - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196