Stem-loop cpi-mir-1677d

Accession

MI0029597

Description

Chrysemys picta cpi-mir-1677d precursor miRNA

Sequence

guguuuugugggccUGAUCCAAAGCCCAUUGAAGUCAacugaaguuuuuguacugACUUCAGGUGCUUUGAAUCAaauccccuauucacagu
(((....(.(((..((((.((((((((..((((((((((..........))..)))))))))).)))))).))))...))))....)))...

Structure

---   uuuu u   -cc    C      -  AU        --  ugaa 
   gug    g ggg   UGAU CAAAGC CC  UGAAGUCA  ac    g
   |||    | |||   |||| |||||| ||  ||||||||  ||     
   cac    c ccc   ACUA GUUUCG GG  ACUUCAgu  ug    u
uga   uuau -   uaa    A      U  --        ca  uuuu 

Annotation confidence Not enough data

Genome context

KK088240.1: 7984835-7984926 [-]

Mature cpi-miR-1677d-5p

• Accession: MIMAT0037926
• Description: Chrysemys picta cpi-miR-1677d-5p mature miRNA
• Sequence: 15 - UGAUCCAAAGCCCAUUGAAGUCA - 37
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-1677d-3p

• Accession: MIMAT0037927
• Description: Chrysemys picta cpi-miR-1677d-3p mature miRNA
• Sequence: 56 - ACUUCAGGUGCUUUGAAUCA - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196