Stem-loop cpi-mir-1677h

Accession

MI0029602

Description

Chrysemys picta cpi-mir-1677h precursor miRNA

Sequence

1289 reads, 14.0 reads per million, 12 experiments

ucuggggcucAACUGCUCUCCCAAUUAAGUCAguuggacuuuugauuuuGACUAAAUUGGGAGAAGGGUUGaguccucug
...(((((((((((..((((((((((.((((((..............)))))).))))))))))..)))))))))))...

Structure

ucu           GC          A      uuggac 
   ggggcucAACU  UCUCCCAAUU AGUCAg      u
   |||||||||||  |||||||||| ||||||       
   uccugaGUUGG  AGAGGGUUAA UCAGuu      u
guc           GA          A      uuaguu 

Annotation confidence High

Genome context

chr15: 4640620-4640699 [+]

Mature cpi-miR-1677h-5p

• Accession: MIMAT0037932
• Description: Chrysemys picta cpi-miR-1677h-5p mature miRNA
• Sequence: 11 - AACUGCUCUCCCAAUUAAGUCA - 32
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-1677h-3p

• Accession: MIMAT0037933
• Description: Chrysemys picta cpi-miR-1677h-3p mature miRNA
• Sequence: 50 - GACUAAAUUGGGAGAAGGGUUG - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196