Stem-loop cpi-mir-1788

Accession

MI0029605

Description

Chrysemys picta cpi-mir-1788 precursor miRNA

Sequence

cccucugugugucgGGCUUGUUUUCAGUUGCCUGCgguugguuagaaggacuCAGGCAGCUAAAGCAAGUCUGggacgcgcgaggagaac
.(((((((((.(((((((((((((.(((((((((.((((.........)))))))))))))))))))))))))).))))).)))).....

Structure

----c    -     g             C         C    ggu 
     ccuc ugugu ucgGGCUUGUUUU AGUUGCCUG gguu   u
     |||| ||||| ||||||||||||| ||||||||| ||||   a
     ggag gcgca gGUCUGAACGAAA UCGACGGAC ucag   g
caaga    c     g             -         -    gaa 

Annotation confidence Not enough data

Genome context

KK085206.1: 12443-12532 [+]

Mature cpi-miR-1788-5p

• Accession: MIMAT0037936
• Description: Chrysemys picta cpi-miR-1788-5p mature miRNA
• Sequence: 15 - GGCUUGUUUUCAGUUGCCUGC - 35
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-1788-3p

• Accession: MIMAT0037937
• Description: Chrysemys picta cpi-miR-1788-3p mature miRNA
• Sequence: 53 - CAGGCAGCUAAAGCAAGUCUG - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196