miRBase entry: cpi-mir-3618

Stem-loop cpi-mir-3618

Accession

MI0029613

Description

Chrysemys picta cpi-mir-3618 precursor miRNA

Sequence

gaaugcauugugauuuccaauaauugagacagugauucugaaagcUGUCUACAUUAAUGAAAAGAACaauguaguca
((.((((((((..(((.((.((((..(((((((..........)))))))..)))).)).)))..)))))))).)).

Structure

-  a        ga   c  a    ug       gauu 
 ga ugcauugu  uuu ca uaau  agacagu    c
 || ||||||||  ||| || ||||  |||||||     
 cu auguaaCA  AAA GU AUUA  UCUGUcg    u
a  g        AG   A  A    CA       aaag

Annotation confidence Not enough data

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Genome context

KK082996.1: 3849196-3849272 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-3618

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-3618-3p

Accession	MIMAT0037949
Description	Chrysemys picta cpi-miR-3618-3p mature miRNA
Sequence	46 - UGUCUACAUUAAUGAAAAGAAC - 67
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196