Stem-loop cpi-mir-9578

Accession

MI0029614

Description

Chrysemys picta cpi-mir-9578 precursor miRNA

Sequence

2399 reads, 25.0 reads per million, 12 experiments

uuguucuguccuguuuUGGGACACAAGCAGAGCAUCUgcaugaccuucucuaccuCAUGCUCUGCCUGUGUCCCAAaauaggcagaacauc
.(((((((.((((((((((((((((.(((((((((..(...((.....))...)..))))))))).)))))))))))))))))))))))..

Structure

-u       u                A         CU cau  c 
  uguucug ccuguuuUGGGACACA GCAGAGCAU  g   ga c
  ||||||| |||||||||||||||| |||||||||  |   || u
  acaagac ggauaaAACCCUGUGU CGUCUCGUA  c   cu u
cu       -                C         Cu cau  c 

Annotation confidence High

Genome context

KK082990.1: 122242-122332 [+]

Mature cpi-miR-9578-5p

• Accession: MIMAT0037950
• Description: Chrysemys picta cpi-miR-9578-5p mature miRNA
• Sequence: 17 - UGGGACACAAGCAGAGCAUCU - 37
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-9578-3p

• Accession: MIMAT0037951
• Description: Chrysemys picta cpi-miR-9578-3p mature miRNA
• Sequence: 56 - CAUGCUCUGCCUGUGUCCCAA - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196