Stem-loop cpi-mir-9581

Accession

MI0029618

Description

Chrysemys picta cpi-mir-9581 precursor miRNA

Sequence

361 reads, 4.0 reads per million, 12 experiments

uucggggccagcgccucggcUGGCGUACGUUGGCGUUGCUCCauugaagccagcagcUACGCCGACGUGAGCCAGCUGAUGcucuggcccucgg
..(((((((((.((.(((((((((.(((((((((((.(((...(((....))).))).))))))))))).))))))))).)).))))))).)).

Structure

uu  -       c  c         G           U   CCa   a 
  cg gggccag gc ucggcUGGC UACGUUGGCGU GCU   uug a
  || ||||||| || ||||||||| ||||||||||| |||   |||  
  gc cccgguc cG AGUCGACCG GUGCAGCCGCA cga   gac g
-g  u       u  U         A           U   --c   c 

Annotation confidence Medium

Genome context

KK083124.1: 540566-540659 [-]

Mature cpi-miR-9581-5p

• Accession: MIMAT0037958
• Description: Chrysemys picta cpi-miR-9581-5p mature miRNA
• Sequence: 21 - UGGCGUACGUUGGCGUUGCUCC - 42
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-9581-3p

• Accession: MIMAT0037959
• Description: Chrysemys picta cpi-miR-9581-3p mature miRNA
• Sequence: 58 - UACGCCGACGUGAGCCAGCUGAUG - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196