Stem-loop cpi-mir-9583

Accession

MI0029620

Description

Chrysemys picta cpi-mir-9583 precursor miRNA

Sequence

141 reads, 2.0 reads per million, 12 experiments

ggauggaugggagcCAGCAGUCGGAGAAGAAGAGACggugacuaaccuccgUAACUUGUUCUUCGAGAUGUUGCUcacguccaguc
...((((((.((((.((((.((((((((.(((..((((.(......).))))..))).))))))))..)))))))).))))))...

Structure

gga      g    C    -G        G   AG    u ac 
   uggaug gagc AGCA  UCGGAGAA AAG  ACgg g  u
   |||||| |||| ||||  |||||||| |||  |||| |   
   accugc cUCG UUGU  AGCUUCUU UUC  Ugcc c  a
cug      a    -    AG        G   AA    u ca 

Annotation confidence High

Genome context

KK083131.1: 1142051-1142136 [+]

Mature cpi-miR-9583-5p

• Accession: MIMAT0037962
• Description: Chrysemys picta cpi-miR-9583-5p mature miRNA
• Sequence: 15 - CAGCAGUCGGAGAAGAAGAGAC - 36
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-9583-3p

• Accession: MIMAT0037963
• Description: Chrysemys picta cpi-miR-9583-3p mature miRNA
• Sequence: 52 - UAACUUGUUCUUCGAGAUGUUGCU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196