Stem-loop cpi-mir-9584

Accession

MI0029621

Description

Chrysemys picta cpi-mir-9584 precursor miRNA

Sequence

3740 reads, 42.0 reads per million, 12 experiments

aaccaucuagagaGCUGUGACUGUUUAGAUGGUCGUGugggguaugcgcaCACAGCCUCAGCAGUCACUGcuuuuuagauguuu
...((((((((((((.(((((((((..((.(((.(((((.(.....).))))).)))))))))))))).))))))))))))...

Structure

aac            U         UA  U   C     g g 
   caucuagagaGC GUGACUGUU  GA GGU GUGug g u
   |||||||||||| |||||||||  || ||| ||||| | a
   guagauuuuucG CACUGACGA  CU CCG CACac c u
uuu            U         --  -   A     g g 

Annotation confidence Medium

Genome context

KK088210.1: 2524206-2524289 [-]

Mature cpi-miR-9584-5p

• Accession: MIMAT0037964
• Description: Chrysemys picta cpi-miR-9584-5p mature miRNA
• Sequence: 14 - GCUGUGACUGUUUAGAUGGUCGUG - 37
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-9584-3p

• Accession: MIMAT0037965
• Description: Chrysemys picta cpi-miR-9584-3p mature miRNA
• Sequence: 51 - CACAGCCUCAGCAGUCACUG - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196