Stem-loop cpi-mir-9585

Accession

MI0029622

Description

Chrysemys picta cpi-mir-9585 precursor miRNA

Sequence

3415 reads, 39.0 reads per million, 12 experiments

cuccggaguugggGCACCGAUCGUUGGCGACUCaggcuccuccaugggagcaguacccUGAGUCGCCAACAAUCGGUGccucaacucggagaccu
(((((.(((((((((((((((.((((((((((((((((.((((...)))).))...)))))))))))))).))))))))))))))))))))....

Structure

----     g               C              ---  c    a 
    cuccg aguugggGCACCGAU GUUGGCGACUCagg   cu cucc  
    ||||| ||||||||||||||| ||||||||||||||   || |||| u
    gaggc ucaacuccGUGGCUA CAACCGCUGAGUcc   ga gagg  
ucca     -               A              cau  c    g 

Annotation confidence Medium

Genome context

chr2: 20574021-20574115 [-]

Mature cpi-miR-9585-5p

• Accession: MIMAT0037966
• Description: Chrysemys picta cpi-miR-9585-5p mature miRNA
• Sequence: 14 - GCACCGAUCGUUGGCGACUC - 33
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-9585-3p

• Accession: MIMAT0037967
• Description: Chrysemys picta cpi-miR-9585-3p mature miRNA
• Sequence: 59 - UGAGUCGCCAACAAUCGGUG - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196