Stem-loop cpi-mir-9588

Accession

MI0029625

Description

Chrysemys picta cpi-mir-9588 precursor miRNA

Sequence

2113 reads, 21.0 reads per million, 12 experiments

aaaguucaagacuauacCCUCAGAUGUGUCUACUAGUCUGggcucaaucacagAUUAGGGGCAACAUCUGGGCUagagccugagcuaauuc
..((((((.(.((.((.((.(((((((((((.((((((((..........)))))))))))).))))))))).)).))).)))))).....

Structure

---aa      a a  a  c  U       -    A        ggcu 
     aguuca g cu ua CC CAGAUGU GUCU CUAGUCUG    c
     |||||| | || || || ||||||| |||| ||||||||     
     ucgagu c ga aU GG GUCUACA CGGG GAUUAgac    a
cuuaa      c -  g  C  -       A    -        acua 

Annotation confidence High

Genome context

chr6: 45348951-45349041 [+]

Mature cpi-miR-9588-5p

• Accession: MIMAT0037972
• Description: Chrysemys picta cpi-miR-9588-5p mature miRNA
• Sequence: 18 - CCUCAGAUGUGUCUACUAGUCUG - 40
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-9588-3p

• Accession: MIMAT0037973
• Description: Chrysemys picta cpi-miR-9588-3p mature miRNA
• Sequence: 54 - AUUAGGGGCAACAUCUGGGCU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196