Stem-loop cpi-mir-9589

Accession

MI0029626

Description

Chrysemys picta cpi-mir-9589 precursor miRNA

Sequence

1226 reads, 14.0 reads per million, 12 experiments

cugcaggccagauucUGCCCUCAUUUAUACUUGUGUcuucaauggguuuaCACAGGUGGAACCGAGGGCAgaauuuagcccugcaa
.(((((((.(((((((((((((.....(((((((((..((....))...))))))))).....))))))))))))).).)))))).

Structure

c      - c             AUUUA         -cu  a 
 ugcagg c agauucUGCCCUC     UACUUGUGU   uc a
 |||||| | |||||||||||||     |||||||||   ||  
 acgucc g uuuaagACGGGAG     GUGGACACa   gg u
a      c a             CCAAG         uuu  g 

Annotation confidence High

Genome context

KK082936.1: 4435359-4435444 [+]

Mature cpi-miR-9589-5p

• Accession: MIMAT0037974
• Description: Chrysemys picta cpi-miR-9589-5p mature miRNA
• Sequence: 16 - UGCCCUCAUUUAUACUUGUGU - 36
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-9589-3p

• Accession: MIMAT0037975
• Description: Chrysemys picta cpi-miR-9589-3p mature miRNA
• Sequence: 51 - CACAGGUGGAACCGAGGGCA - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196