Stem-loop cpi-mir-9590

Accession

MI0029627

Description

Chrysemys picta cpi-mir-9590 precursor miRNA

Sequence

255 reads, 3.0 reads per million, 12 experiments

ugggcugaugugcAGUGGUGCUGAGAACCUGCAGUUcccauuaacuuuagugaaaUCUGGAGAUGCUCAGCACUUcugaacaacagaucac
((..(((.(((.(((.(((((((((...((.(((....(((((....)))))....))).))...))))))))).))).))).)))..)).

Structure

-  gg   a   g   U         AAC  G   UUcc     a 
 ug  cug ugu cAG GGUGCUGAG   CU CAG    cauua c
 ||  ||| ||| ||| |||||||||   || |||    |||||  
 ac  gac aca guc UCACGACUC   GA GUC    gugau u
c  ua   a   a   U         GUA  G   Uaaa     u 

Annotation confidence Medium

Genome context

KK082916.1: 1152222-1152312 [-]

Mature cpi-miR-9590-5p

• Accession: MIMAT0037976
• Description: Chrysemys picta cpi-miR-9590-5p mature miRNA
• Sequence: 14 - AGUGGUGCUGAGAACCUGCAGUU - 36
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-9590-3p

• Accession: MIMAT0037977
• Description: Chrysemys picta cpi-miR-9590-3p mature miRNA
• Sequence: 56 - UCUGGAGAUGCUCAGCACUU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196