Stem-loop cpi-mir-9590

Accession

MI0029627

Description

Chrysemys picta cpi-mir-9590 precursor miRNA

Sequence

ugggcugaugugcAGUGGUGCUGAGAACCUGCAGUucccauuaacuuuagugaaauCUGGAGAUGCUCAGCACUUCUGAacaacagaucac
((..(((.(((.(((.(((((((((...((.(((....(((((....)))))....))).))...))))))))).))).))).)))..)).

Structure

-  gg   a   g   U         AAC  G   Uucc     a 
 ug  cug ugu cAG GGUGCUGAG   CU CAG    cauua c
 ||  ||| ||| ||| |||||||||   || |||    |||||  
 ac  gac aca GUC UCACGACUC   GA GUC    gugau u
c  ua   a   A   U         GUA  G   uaaa     u 

Annotation confidence Not enough data

Genome context

KK082916.1: 1152222-1152312 [-]

Mature cpi-miR-9590-5p

• Accession: MIMAT0037976
• Description: Chrysemys picta cpi-miR-9590-5p mature miRNA
• Sequence: 14 - AGUGGUGCUGAGAACCUGCAGU - 35
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-9590-3p

• Accession: MIMAT0037977
• Description: Chrysemys picta cpi-miR-9590-3p mature miRNA
• Sequence: 57 - CUGGAGAUGCUCAGCACUUCUGA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196