Stem-loop cpi-mir-9591

Accession

MI0029628

Description

Chrysemys picta cpi-mir-9591 precursor miRNA

Sequence

agagugugcgcccugauCUUGUAAUUGGCUUCACAUAGGUguaagggacugccUAAGUGGAACCAAUUAUCGAAUcagugccucaguacuua
.(((((((.((.(((((.((((((((((.(((((.(((((((.....)).))))).))))).))))))).)))))))).))..)).))))).

Structure

a     -  -c  c     C   -       C     A     -  a 
 gagug ug  gc cugau UUG UAAUUGG UUCAC UAGGU gu a
 ||||| ||  || ||||| ||| ||||||| ||||| ||||| || g
 uucau ac  cg gacUA AGC AUUAACC AGGUG AUccg ca g
a     g  uc  u     -   U       A     A     u  g 

Annotation confidence Not enough data

Genome context

chr3: 62522386-62522477 [+]

Mature cpi-miR-9591-5p

• Accession: MIMAT0037978
• Description: Chrysemys picta cpi-miR-9591-5p mature miRNA
• Sequence: 18 - CUUGUAAUUGGCUUCACAUAGGU - 40
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-9591-3p

• Accession: MIMAT0037979
• Description: Chrysemys picta cpi-miR-9591-3p mature miRNA
• Sequence: 54 - UAAGUGGAACCAAUUAUCGAAU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196