Stem-loop cpi-mir-9593

Accession

MI0029630

Description

Chrysemys picta cpi-mir-9593 precursor miRNA

Sequence

127 reads, 1.0 reads per million, 12 experiments

ucuggccucgguuacgcUGGUGUAAAUCUGGAGUGGAUccccugacuucaguggCGUCACUCCGCAUUUACAUUGCUGugacugagagcacaac
..(((((((((((((((.(((((((((.((((((((..((.(((....))).))..)))))))).))))))))))).))))))))).)).))..

Structure

uc  -  -         -  U         C        AU  c   a 
  ug gc cucgguuac gc GGUGUAAAU UGGAGUGG  cc cug c
  || || ||||||||| || ||||||||| ||||||||  || |||  
  ac cg gagucaguG CG UUACAUUUA GCCUCACU  gg gac u
ca  a  a         U  -         C        GC  u   u 

Annotation confidence High

Genome context

chr8: 6065638-6065731 [-]

Mature cpi-miR-9593-5p

• Accession: MIMAT0037982
• Description: Chrysemys picta cpi-miR-9593-5p mature miRNA
• Sequence: 18 - UGGUGUAAAUCUGGAGUGGAU - 38
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-9593-3p

• Accession: MIMAT0037983
• Description: Chrysemys picta cpi-miR-9593-3p mature miRNA
• Sequence: 55 - CGUCACUCCGCAUUUACAUUGCUG - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196