Stem-loop cpi-mir-9596

Accession

MI0029633

Description

Chrysemys picta cpi-mir-9596 precursor miRNA

Sequence

aagaaguaacgcuuccUGCUAGUUCCAGCGCAGUCCAGcaugauuagaaggguacuggaCUGGGCUACAACUAGAAGGAAGuguugcugcuu
(((.(((((((((((((.((((((..(((.((((((((.((..........)).)))))))).)))..)))))).))))))))))))).)))

Structure

   a             G      CC   G        c  gauu 
aag aguaacgcuuccU CUAGUU  AGC CAGUCCAG au    a
||| ||||||||||||| ||||||  ||| |||||||| ||     
uuc ucguuguGAAGGA GAUCAA  UCG GUCagguc ug    g
   g             A      CA   G        a  ggaa 

Annotation confidence Not enough data

Genome context

KK082921.1: 8817053-8817144 [-]

Mature cpi-miR-9596-5p

• Accession: MIMAT0037988
• Description: Chrysemys picta cpi-miR-9596-5p mature miRNA
• Sequence: 17 - UGCUAGUUCCAGCGCAGUCCAG - 38
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-9596-3p

• Accession: MIMAT0037989
• Description: Chrysemys picta cpi-miR-9596-3p mature miRNA
• Sequence: 60 - CUGGGCUACAACUAGAAGGAAG - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196