miRBase entry: cpi-mir-15c

Stem-loop cpi-mir-15c

Accession

MI0029635

Description

Chrysemys picta cpi-mir-15c precursor miRNA

Sequence

ccuuaaaguacucUAGCAGCACAUCAUGGUUUGcaugcucuagcaaaaaugcGAAUCAUUAUUUGCUGCUUUggaaauuuaagga
(((((((...((..(((((((.((.(((((((((((((....)))....)))))))))).)).)))))))..))...))))))).

Structure

-       gua  cU       C  C          ----   u 
 ccuuaaa   cu  AGCAGCA AU AUGGUUUGca    ugc c
 |||||||   ||  ||||||| || ||||||||||    |||  
 ggaauuu   gg  UCGUCGU UA UACUAAGcgu    acg u
a       aaa  UU       U  U          aaaa   a

Annotation confidence Not enough data

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Genome context

KK088236.1: 7080688-7080772 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-15c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-15c-5p

Accession	MIMAT0037992
Description	Chrysemys picta cpi-miR-15c-5p mature miRNA
Sequence	14 - UAGCAGCACAUCAUGGUUUG - 33
Evidence	experimental Illumina [1]

Mature cpi-miR-15c-3p

Accession	MIMAT0037993
Description	Chrysemys picta cpi-miR-15c-3p mature miRNA
Sequence	53 - GAAUCAUUAUUUGCUGCUUU - 72
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196