Stem-loop ami-let-7c-2

Accession

MI0029645

Description

Alligator mississippiensis ami-let-7c-2 precursor miRNA

Sequence

gggugggggccggggUGAGGUAGUAGGUUGUAUGGUUuagagucacacccccggagauaaCUGUACAGCCUCCUAGCUUUCCccgcgccccccca
.((.(((((((((((.(((.(((.(((((((((((((....(((...((...)).)))))))))))))))).))).))).))))).)))))))).

Structure

g  u      -     U   G   U             uaga   aca  c 
 gg gggggc cgggg GAG UAG AGGUUGUAUGGUU    guc   cc  
 || |||||| ||||| ||| ||| |||||||||||||    |||   || c
 cc cccccg gccCC UUC AUC UCCGACAUGUCaa    uag   gg  
a  -      c     U   G   C             ----   --a  c 

Annotation confidence Not enough data

Genome context

AKHW03006683.1: 238111-238205 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ami-let-7c-2

Mature ami-let-7c-5p

• Accession: MIMAT0038005
• Description: Alligator mississippiensis ami-let-7c-5p mature miRNA
• Sequence: 16 - UGAGGUAGUAGGUUGUAUGGUU - 37
• Evidence: experimental ; Illumina [1]

Mature ami-let-7c-2-3p

• Accession: MIMAT0038007
• Description: Alligator mississippiensis ami-let-7c-2-3p mature miRNA
• Sequence: 61 - CUGUACAGCCUCCUAGCUUUCC - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196