Stem-loop ami-mir-1a-1

Accession

MI0029652

Description

Alligator mississippiensis ami-mir-1a-1 precursor miRNA

Sequence

gaaacuaccugcuugagagACAUACUUCUUUAUAUGCCCAUAUgaaccuggcaagcuaUGGAAUGUAAAGAAGUAUGUAUuucagguggggaucauucu
(((....(((((((((((.((((((((((((((((..(((((..............))))).)))))))))))))))).))))))))))).....))).

Structure

-   -acua           g                GC     Ugaacc 
 gaa     ccugcuugaga ACAUACUUCUUUAUAU  CCAUA      u
 |||     ||||||||||| ||||||||||||||||  |||||       
 cuu     ggguggacuuU UGUAUGAAGAAAUGUA  GGUau      g
u   acuag           A                -A     cgaacg 

Annotation confidence Not enough data

Genome context

AKHW03001485.1: 1710007-1710105 [-]

Mature ami-miR-1a-5p

• Accession: MIMAT0038018
• Description: Alligator mississippiensis ami-miR-1a-5p mature miRNA
• Sequence: 20 - ACAUACUUCUUUAUAUGCCCAUAU - 43
• Evidence: experimental ; Illumina [1]

Mature ami-miR-1a-3p

• Accession: MIMAT0038019
• Description: Alligator mississippiensis ami-miR-1a-3p mature miRNA
• Sequence: 59 - UGGAAUGUAAAGAAGUAUGUAU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196