Stem-loop ami-mir-1a-2

Accession

MI0029653

Description

Alligator mississippiensis ami-mir-1a-2 precursor miRNA

Sequence

accugcccagaguACAUACUUCUUUAUGUACCCAUAugaacauacaaugcuaUGGAAUGUAAAGAAGUAUGUAUuuuuggcaggcac
.((((((.(((((((((((((((((((((..(((((..(........)..))))).))))))))))))))))))))).))))))...

Structure

--a      c                     AC     ug aca 
   ccugcc agaguACAUACUUCUUUAUGU  CCAUA  a   u
   |||||| |||||||||||||||||||||  |||||  |    
   ggacgg uuuUAUGUAUGAAGAAAUGUA  GGUau  u   a
cac      u                     -A     cg aac 

Annotation confidence Not enough data

Genome context

AKHW03000230.1: 130792-130878 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-1a-2

Mature ami-miR-1a-3p

• Accession: MIMAT0038019
• Description: Alligator mississippiensis ami-miR-1a-3p mature miRNA
• Sequence: 53 - UGGAAUGUAAAGAAGUAUGUAU - 74
• Evidence: experimental ; Illumina [1]

Mature ami-miR-1a-2-5p

• Accession: MIMAT0038020
• Description: Alligator mississippiensis ami-miR-1a-2-5p mature miRNA
• Sequence: 14 - ACAUACUUCUUUAUGUACCCAUA - 36
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196