Stem-loop ami-mir-9-1

Accession

MI0029659

Description

Alligator mississippiensis ami-mir-9-1 precursor miRNA

Sequence

ggguugguuguuaUCUUUGGUUAUCUAGCUGUAUGaguggugucaauucuucaUAAAGCUAGAUAACCGAAAGUaaaaauaaccccau
((((((....((((.(((((((((((((((.((((((.(((....))).)))))).))))))))))))))).))))...))))))...

Structure

---      guug    C               G      u   g 
   ggguug    uuaU UUUGGUUAUCUAGCU UAUGag ggu u
   ||||||    |||| ||||||||||||||| |||||| |||  
   cccaau    aaUG AAGCCAAUAGAUCGA AUacuu uua c
uac      -aaa    A               A      c   a 

Annotation confidence Not enough data

Genome context

AKHW03001603.1: 781209-781296 [+]

Mature ami-miR-9-5p

• Accession: MIMAT0038027
• Description: Alligator mississippiensis ami-miR-9-5p mature miRNA
• Sequence: 14 - UCUUUGGUUAUCUAGCUGUAUG - 35
• Evidence: experimental ; Illumina [1]

Mature ami-miR-9-3p

• Accession: MIMAT0038028
• Description: Alligator mississippiensis ami-miR-9-3p mature miRNA
• Sequence: 54 - UAAAGCUAGAUAACCGAAAGU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196