Stem-loop ami-mir-16a-1

Accession

MI0029669

Description

Alligator mississippiensis ami-mir-16a-1 precursor miRNA

Sequence

augucaaucguaccuUAGCAGCACGUAAAUAUUGGUGuuaagauucuguaaauaucuCCAGUAUUAACUGUGCUGCUGAaguaaguuuggccu
..(((((.(.(((.((((((((((((.((((((((.....((((.........)))))))))))).)).)))))))))).))).).)))))..

Structure

au     u g   c          -  A        UGuua    ucu 
  gucaa c uac uUAGCAGCAC GU AAUAUUGG     agau   g
  ||||| | ||| |||||||||| || ||||||||     ||||   u
  cgguu g aug AGUCGUCGUG CA UUAUGACC     ucua   a
uc     u a   a          U  A        -----    uaa 

Annotation confidence Not enough data

Genome context

AKHW03003532.1: 3751753-3751845 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-16a-1

Mature ami-miR-16a-5p

• Accession: MIMAT0038042
• Description: Alligator mississippiensis ami-miR-16a-5p mature miRNA
• Sequence: 16 - UAGCAGCACGUAAAUAUUGGUG - 37
• Evidence: experimental ; Illumina [1]

Mature ami-miR-16a-3p

• Accession: MIMAT0038043
• Description: Alligator mississippiensis ami-miR-16a-3p mature miRNA
• Sequence: 58 - CCAGUAUUAACUGUGCUGCUGA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196