miRBase entry: ami-mir-16b

Stem-loop ami-mir-16b

Accession

MI0029671

Description

Alligator mississippiensis ami-mir-16b precursor miRNA

Sequence

ucagcagugcucUAGCAGCACGUAAAUACUGGAGucgaggacugccuggcugcUCUCCAGUAUUGCAUUGCUGCUugagugaggcugg
.((((..(((((.(((((((....((((((((((.(.(((....))).).....))))))))))....))))))).)))))..)))).

Structure

u    ag     U       CGUA          ----u g   a 
 cagc  ugcuc AGCAGCA    AAUACUGGAG     c agg c
 ||||  ||||| |||||||    ||||||||||     | |||  
 gucg  gugag UCGUCGU    UUAUGACCUC     g ucc u
g    ga     u       UACG          Ucguc g   g

Annotation confidence Not enough data

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Genome context

AKHW03003879.1: 2724717-2724804 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-16b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-16b-5p

Accession	MIMAT0038045
Description	Alligator mississippiensis ami-miR-16b-5p mature miRNA
Sequence	13 - UAGCAGCACGUAAAUACUGGAG - 34
Evidence	experimental Illumina [1]

Mature ami-miR-16b-3p

Accession	MIMAT0038046
Description	Alligator mississippiensis ami-miR-16b-3p mature miRNA
Sequence	54 - UCUCCAGUAUUGCAUUGCUGCU - 75
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196