Stem-loop ami-mir-17

Accession

MI0029672

Description

Alligator mississippiensis ami-mir-17 precursor miRNA

Sequence

gucagaguaauguCAAAGUGCUUACAGUGCAGGUAGugauauauagaaccuaCUGCAGUGAAGGCACUUGUAGCauuauagugacaa
((((..(((((((..((((((((.((.(((((...((..........))...))))).)).))))))))...)))))))..))))..

Structure

--    ga       -CA        A  G     GUA  gaua 
  guca  guaaugu   AAGUGCUU CA UGCAG   Gu    u
  ||||  |||||||   |||||||| || |||||   ||     
  cagu  uauuaCG   UUCACGGA GU ACGUC   ca    a
aa    ga       AUG        A  G     auc  agau 

Annotation confidence Not enough data

Genome context

AKHW03002195.1: 10810742-10810828 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ami-mir-17

Mature ami-miR-17-5p

• Accession: MIMAT0038047
• Description: Alligator mississippiensis ami-miR-17-5p mature miRNA
• Sequence: 14 - CAAAGUGCUUACAGUGCAGGUAG - 36
• Evidence: experimental ; Illumina [1]

Mature ami-miR-17-3p

• Accession: MIMAT0038048
• Description: Alligator mississippiensis ami-miR-17-3p mature miRNA
• Sequence: 53 - CUGCAGUGAAGGCACUUGUAGC - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196