miRBase entry: ami-mir-23a

Stem-loop ami-mir-23a

Accession

MI0029678

Description

Alligator mississippiensis ami-mir-23a precursor miRNA

Sequence

ugccacagccagcugggguuccuggugaugcgauuuuuuuacccacugcccaaaAUCACAUUGCCAGGGAUUUCCAacuggcugcgagccc
.(((.(((((((.(((((((((((((((((.((((((..............)))))).)))))))))))).))))).))))))).).))..

Structure

-u  - a       c     -            c      uuuacc 
  gc c cagccag ugggg uuccuggugaug gauuuu      c
  || | ||||||| ||||| |||||||||||| ||||||       
  cg g gucgguc ACCUU AGGGACCGUUAC CUAaaa      a
cc  a c       a     U            A      cccguc

Annotation confidence Not enough data

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Genome context

AKHW03005909.1: 200380-200470 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ami-mir-23a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-23a-3p

Accession	MIMAT0038058
Description	Alligator mississippiensis ami-miR-23a-3p mature miRNA
Sequence	55 - AUCACAUUGCCAGGGAUUUCCA - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196