Stem-loop ami-mir-23b

Accession

MI0029679

Description

Alligator mississippiensis ami-mir-23b precursor miRNA

Sequence

cccaguguuguggcuguuuGGGUUCCUGGCAUGCUGAUUUgugacuuaaaauuaaaAUCACAUUGCCAGGGAUUACCACagagccaugaccauggcu
.(((..(((((((((.(.(((((((((((((((.((((((..............)))))))).))))))))))..))).).)))))))))..)))..

Structure

-c   gu         g u   --          -  C      gugacu 
  cca  guuguggcu u uGG  GUUCCUGGCA UG UGAUUU      u
  |||  ||||||||| | |||  |||||||||| || ||||||       
  ggu  caguaccga a ACC  UAGGGACCGU AC ACUAaa      a
uc   ac         g C   AU          U  -      auuaaa 

Annotation confidence Not enough data

Genome context

AKHW03006358.1: 16892962-16893058 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ami-mir-23b

Mature ami-miR-23b-5p

• Accession: MIMAT0038059
• Description: Alligator mississippiensis ami-miR-23b-5p mature miRNA
• Sequence: 20 - GGGUUCCUGGCAUGCUGAUUU - 40
• Evidence: experimental ; Illumina [1]

Mature ami-miR-23b-3p

• Accession: MIMAT0038060
• Description: Alligator mississippiensis ami-miR-23b-3p mature miRNA
• Sequence: 57 - AUCACAUUGCCAGGGAUUACCAC - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196