Stem-loop ami-mir-30a

Accession

MI0029690

Description

Alligator mississippiensis ami-mir-30a precursor miRNA

Sequence

cuguugacagugagcgacUGUAAACAUCCUCGACUGGAAGCUgugaagcagcagauggggCUUUCAGUCGGAUGUUUGCAGCugccaacugccacag
((((.(.((((..(((.((((((((((((..(((((((((((.(............).))))))))))))))))))))))).)))..))))).))))

Structure

    u a    ga   a            UC           g gaagc 
cugu g cagu  gcg cUGUAAACAUCC  GACUGGAAGCU u     a
|||| | ||||  ||| ||||||||||||  ||||||||||| |      
gaca c guca  cgu GACGUUUGUAGG  CUGACUUUCgg g     g
    c -    ac   C            --           g uagac 

Annotation confidence Not enough data

Genome context

AKHW03000483.1: 1465825-1465921 [+]

Mature ami-miR-30a-5p

• Accession: MIMAT0038077
• Description: Alligator mississippiensis ami-miR-30a-5p mature miRNA
• Sequence: 19 - UGUAAACAUCCUCGACUGGAAGCU - 42
• Evidence: experimental ; Illumina [1]

Mature ami-miR-30a-3p

• Accession: MIMAT0038078
• Description: Alligator mississippiensis ami-miR-30a-3p mature miRNA
• Sequence: 61 - CUUUCAGUCGGAUGUUUGCAGC - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196