Stem-loop ami-mir-30c-2

Accession

MI0029693

Description

Alligator mississippiensis ami-mir-30c-2 precursor miRNA

Sequence

gcucugagugacagguauUGUAAACAUCCUACACUCUCAGCuguggaaaaugaggaagcUGGGAGAAGGCUGUUUACUCUcccugacuuagauagc
..(((((((..((((....(((((((.(((...(((((((((..............))))))))).))).)))))))....)))))))))))....

Structure

--gc       ga    uauU       U   ACA         guggaa 
    ucugagu  cagg    GUAAACA CCU   CUCUCAGCu      a
    |||||||  ||||    ||||||| |||   |||||||||       
    agauuca  gucc    CAUUUGU GGA   GAGGGUcga      a
cgau       --    cUCU       C   --A         aggagu 

Annotation confidence Not enough data

Genome context

AKHW03000483.1: 1500928-1501023 [+]

Mature ami-miR-30c-5p

• Accession: MIMAT0038081
• Description: Alligator mississippiensis ami-miR-30c-5p mature miRNA
• Sequence: 19 - UGUAAACAUCCUACACUCUCAGC - 41
• Evidence: experimental ; Illumina [1]

Mature ami-miR-30c-2-3p

• Accession: MIMAT0038083
• Description: Alligator mississippiensis ami-miR-30c-2-3p mature miRNA
• Sequence: 60 - UGGGAGAAGGCUGUUUACUCU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196