Stem-loop ami-mir-31

Accession

MI0029696

Description

Alligator mississippiensis ami-mir-31 precursor miRNA

Sequence

cagagcuagagaggAGGCAAGAUGUUGGCAUAGCUGuugaccuaagaaccUGCUAUGCCAACAUCUUGUCAUcuuucuugucuac
.(((.(.(((((((.(((((((((((((((((((.(((........)))..))))))))))))))))))).))))))).))))..

Structure

-c   g u       A                   -U   gac 
  aga c agagagg GGCAAGAUGUUGGCAUAGC  Guu   c
  ||| | ||||||| |||||||||||||||||||  |||    
  ucu g ucuuucU CUGUUCUACAACCGUAUCG  caa   u
ca   - u       A                   Uc   gaa 

Annotation confidence Not enough data

Genome context

AKHW03006964.1: 656446-656530 [+]

Mature ami-miR-31-5p

• Accession: MIMAT0038088
• Description: Alligator mississippiensis ami-miR-31-5p mature miRNA
• Sequence: 15 - AGGCAAGAUGUUGGCAUAGCUG - 36
• Evidence: experimental ; Illumina [1]

Mature ami-miR-31-3p

• Accession: MIMAT0038089
• Description: Alligator mississippiensis ami-miR-31-3p mature miRNA
• Sequence: 51 - UGCUAUGCCAACAUCUUGUCAU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196