miRBase entry: ami-mir-93

Stem-loop ami-mir-93

Accession

MI0029705

Description

Alligator mississippiensis ami-mir-93 precursor miRNA

Sequence

cuugagcugcgguggcucCAAAGUGCUGUUCGUGCAGGUAGugugugcagccaucUACUGCCGGGCAGCACUUCCCgagcccccgcagccg
.....(((((((.(((((..((((((((((((.((((.(((.(((......))))))))))))))))))))))...))))).)))))))..

Structure

cuuga       u     -CA            U    G   u   ug 
     gcugcgg ggcuc   AAGUGCUGUUCG GCAG UAG gug  c
     ||||||| |||||   |||||||||||| |||| ||| |||   
     cgacgcc ccgag   UUCACGACGGGC CGUC AUc uac  a
---gc       c     CCC            -    -   -   cg

Annotation confidence Not enough data

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Genome context

AKHW03000196.1: 16336-16426 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-93

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-93-5p

Accession	MIMAT0038104
Description	Alligator mississippiensis ami-miR-93-5p mature miRNA
Sequence	19 - CAAAGUGCUGUUCGUGCAGGUAG - 41
Evidence	experimental Illumina [1]

Mature ami-miR-93-3p

Accession	MIMAT0038105
Description	Alligator mississippiensis ami-miR-93-3p mature miRNA
Sequence	56 - UACUGCCGGGCAGCACUUCCC - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196