Stem-loop ami-mir-100

Accession

MI0029710

Description

Alligator mississippiensis ami-mir-100 precursor miRNA

Sequence

ugcccguugccacaAACCCGUAGAUCCGAACUUGUGgugauauuccacaCAAGCUUGUAUCUAUAGGUAUGugucuucauggcaag
((((.(..(.((((.(((.((((((.(((.((((((.((......)))))))).))).)))))).))).)))).)..)..))))..

Structure

--    -c uu c    A   C      C   A      g  au 
  ugcc  g  g caca ACC GUAGAU CGA CUUGUG ug  a
  ||||  |  | |||| ||| |||||| ||| |||||| ||   
  acgg  c  c guGU UGG UAUCUA GUU GAACac ac  u
ga    ua uu u    A   A      U   C      -  cu 

Annotation confidence Not enough data

Genome context

AKHW03002395.1: 3923373-3923458 [+]

Mature ami-miR-100-5p

• Accession: MIMAT0038114
• Description: Alligator mississippiensis ami-miR-100-5p mature miRNA
• Sequence: 15 - AACCCGUAGAUCCGAACUUGUG - 36
• Evidence: experimental ; Illumina [1]

Mature ami-miR-100-3p

• Accession: MIMAT0038115
• Description: Alligator mississippiensis ami-miR-100-3p mature miRNA
• Sequence: 50 - CAAGCUUGUAUCUAUAGGUAUG - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196