Stem-loop ami-mir-138-2

Accession

MI0029743

Description

Alligator mississippiensis ami-mir-138-2 precursor miRNA

Sequence

guauuguugcugcAGCUGGUGUUGUGAAUCAGGCcgacaacaagcgcauccuacuauccggCUAUUUCACUACACCAGGGUUgcaucauaccac
((((.(.(((.((..(((((((.(((((...(((((......................)))))..))))).))))))).)).))).)))))...

Structure

---    u u   u  AG       U     UCA     acaacaagcg 
   guau g ugc gc  CUGGUGU GUGAA   GGCcg          c
   |||| | ||| ||  ||||||| |||||   |||||           
   caua c acg UG  GACCACA CACUU   UCggc          a
cac    - u   U  -G       U     -UA     cuaucauccu 

Annotation confidence Not enough data

Genome context

AKHW03005442.1: 274373-274466 [+]

Mature ami-miR-138-5p

• Accession: MIMAT0038155
• Description: Alligator mississippiensis ami-miR-138-5p mature miRNA
• Sequence: 14 - AGCUGGUGUUGUGAAUCAGGC - 34
• Evidence: experimental ; Illumina [1]

Mature ami-miR-138-2-3p

• Accession: MIMAT0038157
• Description: Alligator mississippiensis ami-miR-138-2-3p mature miRNA
• Sequence: 62 - CUAUUUCACUACACCAGGGUU - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196