Stem-loop ami-mir-139

Accession

MI0029744

Description

Alligator mississippiensis ami-mir-139 precursor miRNA

Sequence

aggccuggcuguauUCUACAGUGCAUGUGUCUCCAguguuucuaagcgacUGGAGAUACAGCCCUGUCGGAauaacagccagcgccaa
.((((((((((((((((((((.((.(((((((((((((((....))).)))))))))))))).)))).))))).)))))))).)))..

Structure

-a   -        -     -    U  A            -   u 
  ggc cuggcugu auUCU ACAG GC UGUGUCUCCAgu guu c
  ||| |||||||| ||||| |||| || |||||||||||| |||  
  ccg gaccgaca uaAGG UGUC CG ACAUAGAGGUca cga u
aa   c        a     C    C  -            g   a 

Annotation confidence Not enough data

Genome context

AKHW03005702.1: 33801-33888 [+]

Mature ami-miR-139-5p

• Accession: MIMAT0038158
• Description: Alligator mississippiensis ami-miR-139-5p mature miRNA
• Sequence: 15 - UCUACAGUGCAUGUGUCUCCA - 35
• Evidence: experimental ; Illumina [1]

Mature ami-miR-139-3p

• Accession: MIMAT0038159
• Description: Alligator mississippiensis ami-miR-139-3p mature miRNA
• Sequence: 51 - UGGAGAUACAGCCCUGUCGGA - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196