Stem-loop ami-mir-142-1

Accession

MI0029746

Description

Alligator mississippiensis ami-mir-142-1 precursor miRNA

Sequence

gacagugcagucaccCAUAAAGUAGAAAGCACUACUAaacagcacugcagggUGUAGUGUUUCCUACUUUAUGGAugaguguacugu
.((((((((.(((.(((((((((((.(((((((((....(.((...)).)...))))))))).))))))))))).))).))))))))

Structure

g        g   c           A         UAaa a  a 
 acagugca uca cCAUAAAGUAG AAGCACUAC    c gc  
 |||||||| ||| ||||||||||| |||||||||    | || c
 ugucaugu agu GGUAUUUCAUC UUUGUGAUG    g cg  
-        g   A           C         -Ugg a  u 

Annotation confidence Not enough data

Genome context

AKHW03002077.1: 1358126-1358212 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-142-1

Mature ami-miR-142-5p

• Accession: MIMAT0038162
• Description: Alligator mississippiensis ami-miR-142-5p mature miRNA
• Sequence: 16 - CAUAAAGUAGAAAGCACUACUA - 37
• Evidence: experimental ; Illumina [1]

Mature ami-miR-142-3p

• Accession: MIMAT0038163
• Description: Alligator mississippiensis ami-miR-142-3p mature miRNA
• Sequence: 53 - UGUAGUGUUUCCUACUUUAUGGA - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196