Stem-loop ami-mir-146b

Accession

MI0029752

Description

Alligator mississippiensis ami-mir-146b precursor miRNA

Sequence

cgcuccuuggcuuUGAGAACUGAAUUCCAUAGGCUuuaaaagacaaaaaaAGCCCUAUGGAUUCAGUUCUGUagcugggcggcaaa
.(((.(((((((...((((((((((.(((((((((((...........)))).)))))))))))))))))..))))))).)))...

Structure

--c   c       uUG          U       -    aaaa 
   gcu cuuggcu   AGAACUGAAU CCAUAGG CUuu    g
   ||| |||||||   |||||||||| ||||||| ||||    a
   cgg gggucga   UCUUGACUUA GGUAUCC GAaa    c
aaa   c       -UG          -       C    aaaa 

Annotation confidence Not enough data

Genome context

AKHW03001922.1: 14431074-14431159 [-]

Mature ami-miR-146b-5p

• Accession: MIMAT0038172
• Description: Alligator mississippiensis ami-miR-146b-5p mature miRNA
• Sequence: 14 - UGAGAACUGAAUUCCAUAGGCU - 35
• Evidence: experimental ; Illumina [1]

Mature ami-miR-146b-3p

• Accession: MIMAT0038173
• Description: Alligator mississippiensis ami-miR-146b-3p mature miRNA
• Sequence: 51 - AGCCCUAUGGAUUCAGUUCUGU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196