Stem-loop ami-mir-146c

Accession

MI0029753

Description

Alligator mississippiensis ami-mir-146c precursor miRNA

Sequence

ggcaguucccagcucUGAGAACUGAAUUCCAUGGACUGguucccucuucauaucuucaGUCCAUAGUAGUCAGUUCUCUagcuuggcuguauc
.((((((...((((..(((((((((...(.(((((((((................))))))))).)...))))))))).)))).))))))...

Structure

--g      ccc    cU         AUU C         uucccuc 
   gcaguu   agcu  GAGAACUGA   C AUGGACUGg       u
   ||||||   ||||  |||||||||   | |||||||||        
   ugucgg   ucga  CUCUUGACU   G UACCUGacu       u
cua      --u    -U         GAU A         ucuauac 

Annotation confidence Not enough data

Genome context

AKHW03004653.1: 5690404-5690496 [-]

Mature ami-miR-146c-5p

• Accession: MIMAT0038174
• Description: Alligator mississippiensis ami-miR-146c-5p mature miRNA
• Sequence: 16 - UGAGAACUGAAUUCCAUGGACUG - 38
• Evidence: experimental ; Illumina [1]

Mature ami-miR-146c-3p

• Accession: MIMAT0038175
• Description: Alligator mississippiensis ami-miR-146c-3p mature miRNA
• Sequence: 59 - GUCCAUAGUAGUCAGUUCUCU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196