Stem-loop ami-mir-193a

Accession

MI0029775

Description

Alligator mississippiensis ami-mir-193a precursor miRNA

Sequence

caugcgagcugagggcUGGGUCUUUGCGGGCGAGGUGagagguucgugcguucAACUGGCCUACAAAGUCCCAguucucggcucccagc
..((.(((((((((((((((.(((((.((((.((.((((.(.......).)))).)).)))).))))).))))))))))))))).))..

Structure

ca  c               U     C    G  G    a gu 
  ug gagcugagggcUGGG CUUUG GGGC AG UGag g  u
  || ||||||||||||||| ||||| |||| || |||| |  c
  ac cucggcucuugACCC GAAAC UCCG UC Acuu c  g
cg  c               U     A    G  A    g gu 

Annotation confidence Not enough data

Genome context

AKHW03004113.1: 5177003-5177091 [-]

Mature ami-miR-193a-5p

• Accession: MIMAT0038208
• Description: Alligator mississippiensis ami-miR-193a-5p mature miRNA
• Sequence: 17 - UGGGUCUUUGCGGGCGAGGUG - 37
• Evidence: experimental ; Illumina [1]

Mature ami-miR-193a-3p

• Accession: MIMAT0038209
• Description: Alligator mississippiensis ami-miR-193a-3p mature miRNA
• Sequence: 54 - AACUGGCCUACAAAGUCCCA - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196