Stem-loop ami-mir-193b

Accession

MI0029776

Description

Alligator mississippiensis ami-mir-193b precursor miRNA

Sequence

aaaguugugguuccagaguCGGGGUUUUGGGGGCAAGAUGAgcuuauguuuuauccAACUGGCCCACAAAGUCCCGCUuuugguggucacuuugu
......((((..((((((.(((((((((((((.((.(((((((....).))))))....)).))).)))))))))).))))))...)))).....

Structure

aaaguu    -uu      u          -   G  ---A      - u 
      gugg   ccagag CGGGGUUUUG GGG CA    GAUGAg c u
      ||||   |||||| |||||||||| ||| ||    |||||| |  
      cacu   gguuuU GCCCUGAAAC CCC GU    cuauuu g a
-uguuu    ggu      C          A   G  CAAc      u u 

Annotation confidence Not enough data

Genome context

AKHW03004154.1: 5490769-5490863 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-193b

Mature ami-miR-193b-5p

• Accession: MIMAT0038210
• Description: Alligator mississippiensis ami-miR-193b-5p mature miRNA
• Sequence: 20 - CGGGGUUUUGGGGGCAAGAUGA - 41
• Evidence: experimental ; Illumina [1]

Mature ami-miR-193b-3p

• Accession: MIMAT0038211
• Description: Alligator mississippiensis ami-miR-193b-3p mature miRNA
• Sequence: 57 - AACUGGCCCACAAAGUCCCGCU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196