Stem-loop ami-mir-196-2

Accession

MI0029780

Description

Alligator mississippiensis ami-mir-196-2 precursor miRNA

Sequence

gugcagcugaucugugguuUAGGUAGUUUCAUGUUGUUGGgauuggcuuuuagcucggcaacaagaaacugccuuaauuacgucaguuaguguuc
..(((((((((..((((((.((((((((((.((((((((((.(((.....))))))))))))).)))))))))).))))))))))))).))....

Structure

--gu  -       cu      U          A          a   g 
    gc agcugau  gugguu AGGUAGUUUC UGUUGUUGGg uug c
    || |||||||  |||||| |||||||||| |||||||||| ||| u
    ug uugacug  cauuaa uccgucaaag acaacggcuc gau u
cuug  a       --      u          a          -   u 

Annotation confidence Not enough data

Genome context

AKHW03000840.1: 280047-280141 [+]

Mature ami-miR-196-5p

• Accession: MIMAT0038215
• Description: Alligator mississippiensis ami-miR-196-5p mature miRNA
• Sequence: 20 - UAGGUAGUUUCAUGUUGUUGG - 40
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196