Stem-loop ami-mir-196-3

Accession

MI0029781

Description

Alligator mississippiensis ami-mir-196-3 precursor miRNA

Sequence

cgagaacugcugugugguuUAGGUAGUUUCAUGUUGUUGGggcuccaccuuucucucuacagcacgaaacugccuuaauuacuucaguugaaaucgu
(((.....((((.((((((.((((((((((.((((((.((((...........)))).)))))).)))))))))).))))))..)))).....))).

Structure

-   gaacu    -u      U          A      U    cucc 
 cga     gcug  gugguu AGGUAGUUUC UGUUGU GGgg    a
 |||     ||||  |||||| |||||||||| |||||| ||||    c
 gcu     ugac  cauuaa uccgucaaag acgaca cucu    c
u   aaagu    uu      u          c      u    cuuu 

Annotation confidence Not enough data

Genome context

AKHW03005461.1: 24902794-24902890 [-]

Mature ami-miR-196-5p

• Accession: MIMAT0038215
• Description: Alligator mississippiensis ami-miR-196-5p mature miRNA
• Sequence: 20 - UAGGUAGUUUCAUGUUGUUGG - 40
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196