Stem-loop ami-mir-199-1

Accession

MI0029782

Description

Alligator mississippiensis ami-mir-199-1 precursor miRNA

Sequence

aguccagcccagccugCCCAGUGUUCAGACUACCUGUUcaggagcauaugaaguuguACAGUAGUCUGCACAUUGGUUAgaucgggcuuggcau
.(((.(((((...(((.(((((((.((((((((.(((.(((...(....)...))).))))))))))).))))))).)))...))))).)))..

Structure

-a   c     agc   C       U        C   U   gag a 
  guc agccc   cug CCAGUGU CAGACUAC UGU cag   c u
  ||| |||||   ||| ||||||| |||||||| ||| |||   |  
  cgg ucggg   gAU GGUUACA GUCUGAUG ACA guu   g a
ua   u     cua   U       C        -   u   gaa u 

Annotation confidence Not enough data

Genome context

AKHW03001975.1: 179922-180015 [-]

Mature ami-miR-199-5p

• Accession: MIMAT0038216
• Description: Alligator mississippiensis ami-miR-199-5p mature miRNA
• Sequence: 17 - CCCAGUGUUCAGACUACCUGUU - 38
• Evidence: experimental ; Illumina [1]

Mature ami-miR-199-3p

• Accession: MIMAT0038217
• Description: Alligator mississippiensis ami-miR-199-3p mature miRNA
• Sequence: 58 - ACAGUAGUCUGCACAUUGGUUA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196