Stem-loop ami-mir-204-1

Accession

MI0029789

Description

Alligator mississippiensis ami-mir-204-1 precursor miRNA

Sequence

ugugaccuguggacUUCCCUUUGUCAUCCUAUGCCUgagaauauaugaaggggGCUGGGAAGGCAAAGGGACGUucaauugucaucacu
.(((((...(((((.((((((((((.(((((.((((...............))))))))).)))))))))).)))))...)))))....

Structure

---u     cug     U          A     U    gagaau 
    gugac   uggac UCCCUUUGUC UCCUA GCCU      a
    |||||   ||||| |||||||||| ||||| ||||      u
    uacug   acuUG AGGGAAACGG AGGGU CGgg      a
ucac     uua     C          A     -    ggaagu 

Annotation confidence Not enough data

Genome context

AKHW03006358.1: 27629956-27630044 [+]

Mature ami-miR-204-5p

• Accession: MIMAT0038225
• Description: Alligator mississippiensis ami-miR-204-5p mature miRNA
• Sequence: 15 - UUCCCUUUGUCAUCCUAUGCCU - 36
• Evidence: experimental ; Illumina [1]

Mature ami-miR-204-3p

• Accession: MIMAT0038226
• Description: Alligator mississippiensis ami-miR-204-3p mature miRNA
• Sequence: 54 - GCUGGGAAGGCAAAGGGACGU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196