miRBase entry: ami-mir-217

Stem-loop ami-mir-217

Accession

MI0029801

Description

Alligator mississippiensis ami-mir-217 precursor miRNA

Sequence

uuuugaugucgcagaUACUGCAUCAGGAACUGAUUGGauaauaaucagucacCAUCAGUUCCUAAUGCAUUGCCuucagcaucuaaa
....(((((.(.((.((.(((((.((((((((((.((((........))).).)))))))))).))))).)).)).).)))))....

Structure

uuuu     c c  a  C     C          U -   aau 
    gaugu g ag UA UGCAU AGGAACUGAU G Gau   a
    ||||| | || || ||||| |||||||||| | |||    
    cuacg c uC GU ACGUA UCCUUGACUA c cug   a
aaau     a u  C  U     A          C a   acu

Annotation confidence Not enough data

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Genome context

AKHW03006178.1: 3391396-3391482 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-217

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-217-5p

Accession	MIMAT0038245
Description	Alligator mississippiensis ami-miR-217-5p mature miRNA
Sequence	16 - UACUGCAUCAGGAACUGAUUGG - 37
Evidence	experimental Illumina [1]

Mature ami-miR-217-3p

Accession	MIMAT0038246
Description	Alligator mississippiensis ami-miR-217-3p mature miRNA
Sequence	53 - CAUCAGUUCCUAAUGCAUUGCC - 74
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196