Stem-loop ami-mir-219b

Accession

MI0029805

Description

Alligator mississippiensis ami-mir-219b precursor miRNA

Sequence

ggagucuccgcuccUGAUUGUCCAAACGCAAUUCUUGugccguggaaacguacaaaccaAGAAUUGUGUCUGGACAUCUGuggcggggagucc
(((.((((((((.(.(((.(((((.((((((((((((((.(((....)))..))...)))))))))))).)))))))).).)))))))).)))

Structure

   g        c U   U     A            ---  -c   g 
gga ucuccgcu c GAU GUCCA ACGCAAUUCUUG   ug  cgu g
||| |||||||| | ||| ||||| ||||||||||||   ||  |||  
ccu aggggcgg G CUA CAGGU UGUGUUAAGAac   ac  gca a
   g        u U   -     C            caa  au   a 

Annotation confidence Not enough data

Genome context

AKHW03006215.1: 13580105-13580197 [+]

Mature ami-miR-219b-5p

• Accession: MIMAT0038250
• Description: Alligator mississippiensis ami-miR-219b-5p mature miRNA
• Sequence: 15 - UGAUUGUCCAAACGCAAUUCUUG - 37
• Evidence: experimental ; Illumina [1]

Mature ami-miR-219b-3p

• Accession: MIMAT0038251
• Description: Alligator mississippiensis ami-miR-219b-3p mature miRNA
• Sequence: 60 - AGAAUUGUGUCUGGACAUCUG - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196