miRBase entry: ami-mir-302c

Stem-loop ami-mir-302c

Accession

MI0029814

Description

Alligator mississippiensis ami-mir-302c precursor miRNA

Sequence

uuaaacagccuccuuugcuuuaacauggagguaccugcugccuaaaaaaagUAAGUGCUUCCAUGUUUCAGUGguggugguaguuccu
...(((.(((.((.(((((..(((((((((((((.((((..........)))).)))))))))))))..))))).)).))).)))...

Structure

uua   a   u  u     uu             c    gccu 
   aac gcc cc uugcu  aacauggagguac ugcu    a
   ||| ||| || |||||  ||||||||||||| ||||     
   uug ugg gg gGUGA  UUGUACCUUCGUG AUga    a
ucc   a   u  u     CU             A    aaaa

Annotation confidence Not enough data

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Genome context

AKHW03006071.1: 213788-213875 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ami-mir-302c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-302c-3p

Accession	MIMAT0038266
Description	Alligator mississippiensis ami-miR-302c-3p mature miRNA
Sequence	52 - UAAGUGCUUCCAUGUUUCAGUG - 73
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196