Stem-loop ami-mir-338-2

Accession

MI0029817

Description

Alligator mississippiensis ami-mir-338-2 precursor miRNA

Sequence

ugcaaauguuuauuucuggcAACACUAUCCUGAUGCUGUCUgaguaugugguaaagcUCCAGCAUCAGUGAUUUUGUUGuuagugguaaauucaagc
.((....(((((((.(((((((((..((((((((((((...((((.(......).))))))))))))).)))..))))))))).)))))))....))

Structure

u  aaau       u         CU   -         UCU    a gu 
 gc    guuuauu cuggcAACA  AUC CUGAUGCUG   gagu u  g
 ||    ||||||| |||||||||  ||| |||||||||   |||| |   
 cg    uaaaugg gauuGUUGU  UAG GACUACGAC   CUcg a  g
-  aacu       u         UU   U         ---    a au 

Annotation confidence Not enough data

Genome context

AKHW03004154.1: 12303523-12303619 [+]

Mature ami-miR-338-3p

• Accession: MIMAT0038269
• Description: Alligator mississippiensis ami-miR-338-3p mature miRNA
• Sequence: 58 - UCCAGCAUCAGUGAUUUUGUUG - 79
• Evidence: experimental ; Illumina [1]

Mature ami-miR-338-2-5p

• Accession: MIMAT0038270
• Description: Alligator mississippiensis ami-miR-338-2-5p mature miRNA
• Sequence: 21 - AACACUAUCCUGAUGCUGUCU - 41
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196